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Recent Publications - April 2013

Adachi-Mejia AM, Longacre MR, Skatrud-Mickelson M, Li Z, Purvis LA, Titus LJ, Beach ML, Dalton MA (2013, In press). Variation in access to sugar-sweetened beverages in vending machines across rural, town and urban high schools. Public health [Epub ahead of print]. Link

Andersen SW, Trentham-Dietz A, Figueroa JD, Titus LJ, Cai Q, Long J, Hampton JM, Egan KM, Newcomb PA (2013). Breast cancer susceptibility associated with rs1219648 (fibroblast growth factor receptor 2) and postmenopausal hormone therapy use in a population-based United States study. Menopause 20(3):354-358. Link

Bakitas M, Macmartin M, Trzepkowski K, Robert A, Jackson L, Brown JR, Dionne-Odom JN, Kono A (2013). Palliative care consultations for heart failure patients: How many, when, and why? J Card Failure 19(3):193-201. Link

Bekelis K, Bakhoum SF, Desai A, Mackenzie TA, Roberts DW (2013, In press). Outcome prediction in intracranial tumor surgery: The National Surgical Quality Improvement Program 2005-2010. J Neuro-Oncol [Epub ahead of print]. Link

Black CC, Turk MJ, Dragnev K, Rigas JR (2013, In press). Adenocarcinoma contains more immune tolerance regulatory T-cell lymphocytes (Versus Squamous Carcinoma) in non-small-cell lung cancer. Lung [Epub ahead of print]. Link

Borkar DS, Fleiszig SM, Leong C, Lalitha P, Srinivasan M, Ghanekar AA, Tam C, Li WY, Zegans ME, McLeod SD, Lietman TM, Acharya NR (2013). Association between cytotoxic and invasive pseudomonas aeruginosa and clinical outcomes in bacterial Keratitis. JAMA Ophthalmol 131(2):147-153. PMC Link

Burton-Chase A, Hovick S, Peterson S, Marani S, Vernon S, Amos C, Frazier M, Lynch P, Gritz E (2013). Changes in screening behaviors and attitudes toward screening from pre-test genetic counseling to post-disclosure in Lynch syndrome families. Clin Genet 83(3):215-220.Link

Cao C, Rioult-Pedotti MS, Migani P, Yu CJ, Tiwari R, Parang K, Spaller MR, Goebel DJ, Marshall J (2013). Impairment of TrkB-PSD-95 Signaling in Angelman Syndrome. PLoS Biol 11(2):e1001478. PMCID: 3570550.Link

Collins RL, Hu T, Wejse C, Sirugo G, Williams SM, Moore JH (2013). Multifactor dimensionality reduction reveals a three-locus epistatic interaction associated with susceptibility to pulmonary tuberculosis. BioData Min 6(1):4.Link

Crane-Godreau MA, Payne P (2013). A history of second hand smoke exposure: Are we asking the right questions? Front Physiol 4:25. 3576627: PMC3576627 Link

Dal Cin S, Stoolmiller M, Sargent JD (2013). Exposure to smoking in movies and smoking initiation among black youth. Am J Prev Med 44(4):345-350.  Link

Decastro AJ, Dunphy KA, Hutchinson J, Balboni AL, Cherukuri P, Jerry DJ, Direnzo J (2013). MiR203 mediates subversion of stem cell properties during mammary epithelial differentiation via repression of DeltaNP63alpha and promotes mesenchymal-to-epithelial transition. Cell Death Dis 4:e514. Link

Faber MT, Kjaer SK, Dehlendorff C, Chang-Claude J, Andersen KK, Hogdall E, Webb PM, Jordan SJ, Rossing MA, Doherty JA, Lurie G, Thompson PJ, Carney ME, Goodman MT, Ness RB, Modugno F, Edwards RP, Bunker CH, Goode EL, Fridley BL, Vierkant RA, Larson MC, Schildkraut J, Cramer DW, Terry KL, Vitonis AF, Bandera EV, Olson SH, King M, Chandran U, Kiemeney LA, Massuger LF, van Altena AM, Vermeulen SH, Brinton L, Wentzensen N, Lissowska J, Yang HP, Moysich KB, Odunsi K, Kasza K, Odunsi-Akanji O, Song H, Pharaoh P, Shah M, Whittemore AS, McGuire V, Sieh W, Sutphen R, Menon U, Gayther SA, Ramus SJ, Gentry-Maharaj A, Pearce CL, Wu AH, Pike MC, Risch HA, Jensen A (2013). Cigarette smoking and risk of ovarian cancer: A pooled analysis of 21 case-control studies. Cancer Causes Control. Link

Freytag S, Bickeboller H, Amos CI, Kneib T, Schlather M (2013). A novel kernel for correcting size bias in the logistic kernel machine test with an application to rheumatoid arthritis. Hum Hered 74(2):97-108. Link

Glaser AK, Voigt WH, Davis SC, Zhang R, Gladstone DJ, Pogue BW (2013). Three-dimensional Cerenkov tomography of energy deposition from ionizing radiation beams. Optics letters 38(5):634-636. Link

Harvey JA, Gard CC, Miglioretti DL, Yankaskas BC, Kerlikowske K, Buist DS, Geller BA, Onega TL (2013). Reported Mammographic Density: Film-Screen versus Digital Acquisition. For the Breast Cancer Surveillance C. Radiology 266(3):752-758. PMCID: 3579169.Link

Hillner BE, Tosteson TD, Tosteson AN, Wang Q, Song Y, Onega T, Hanna LG, Siegel BA (2013). Intended versus inferred management after PET for cancer restaging: Analysis of Medicare claims linked to a coverage with evidence development registry. Medical care 51(4):361-367. Link

Hoen AG, Gardner SN, Moore JH (2013). Identification of SNPs associated with variola virus virulence. BioData Min 6(1):3. PMCID: 3599518. Link

Hu T, Andrew AS, Karagas MR, Moore JH (2013). Statistical epistasis networks reduce the computational complexity of searching three-locus genetic models. Pacific Symposium on Biocomputing Pacific Symposium on Biocomputing: 397-408. PMCID: 3587773.Link

Hu T, Chen Y, Kiralis JW, Collins RL, Wejse C, Sirugo G, Williams SM, Moore JH (2013, In press). An information-gain approach to detecting three-way epistatic interactions in genetic association studies.   JAMIA [Epub ahead of print]. Link

Hu T, Chen Y, Kiralis JW, Moore JH (2013, In press). ViSEN: Methodology and software for visualization of statistical epistasis networks. Genet Epidemiol. Link

Hubbard RA, Zhu W, Horblyuk R, Karliner L, Sprague BL, Henderson L, Lee D, Onega T, Buist DS, Sweet A (2013, In press). Diagnostic imaging and biopsy pathways following abnormal screen-film and digital screening mammography. Breast Cancer Res Treat [Epub ahead of print]. Link

Iles MM, Law MH, Stacey SN, Han J, Fang S, Pfeiffer R, Harland M, Macgregor S, Taylor JC, Aben KK, Akslen LA, Avril MF, Azizi E, Bakker B, Benediktsdottir KR, Bergman W, Scarra GB, Brown KM, Calista D, Chaudru V, Fargnoli MC, Cust AE, Demenais F, de Waal AC, Debniak T, Elder DE, Friedman E, Galan P, Ghiorzo P, Gillanders EM, Goldstein AM, Gruis NA, Hansson J, Helsing P, Hocevar M, Hoiom V, Hopper JL, Ingvar C, Janssen M, Jenkins MA, Kanetsky PA, Kiemeney LA, Lang J, Lathrop GM, Leachman S, Lee JE, Lubinski J, Mackie RM, Mann GJ, Martin NG, Mayordomo JI, Molven A, Mulder S, Nagore E, Novakovic S, Okamoto I, Olafsson JH, Olsson H, Pehamberger H, Peris K, Grasa MP, Planelles D, Puig S, Puig-Butille JA, Randerson-Moor J, Requena C, Rivoltini L, Rodolfo M, Santinami M, Sigurgeirsson B, Snowden H, Song F, Sulem P, Thorisdottir K, Tuominen R, Van Belle P, van der Stoep N, van Rossum MM, Wei Q, Wendt J, Zelenika D, Zhang M, Landi MT, Thorleifsson G, Bishop DT, Amos CI, Hayward NK, Stefansson K, Bishop JA, Barrett JH (2013, In press). A variant in FTO shows association with melanoma risk not due to BMI. Nat Genet [Epub ahead of print]. Link

Kar SP, Seldin MF, Chen W, Lu E, Hirschfield GM, Invernizzi P, Heathcote J, Cusi D, Almasio PL, Alvaro D, Andreone P, Andriulli A, Barlassina C, Benedetti A, Bernuzzi F, Bianchi I, Bragazzi M, Brunetto M, Bruno S, Caliari L, Casella G, Coco B, Colli A, Colombo M, Colombo S, Cursaro C, Croce LS, Crosignani A, Donato F, Elia G, Fabris L, Floreani A, Galli A, Grattagliano I, Lazzari R, Lleo A, Macaluso F, Marra F, Marzioni M, Mascia E, Mattalia A, Montanari R, Morini L, Morisco F, Muratori L, Muratori P, Niro G, Picciotto A, Podda M, Portincasa P, Prati D, Raggi C, Rosina F, Rossi S, Sogno I, Spinzi G, Strazzabosco M, Tarallo S, Tarocchi M, Tiribelli C, Toniutto P, Vinci M, Zuin M, Gershwin ME, Siminovitch KA, Amos CI (2013, In press). Pathway-based analysis of primary biliary cirrhosis genome-wide association studies. Genes Immun [Epub ahead of print]. Link

Koestler DC, Christensen BC, Marsit CJ, Kelsey KT, Houseman EA (2013). Recursively partitioned mixture model clustering of DNA methylation data using biologically informed correlation structures. Stat Appl Genet Mol Biol:1-16. Link

Lenna S, Farina AG, Martyanov V, Christmann RB, Wood TA, Farber HW, Scorza R, Whitfield ML, Lafyatis R, Trojanowska M (2013, In press). Increased expression of endoplasmic reticulum stress genes in patients with limited cutaneous systemic sclerosis and pulmonary arterial hypertension. Arthritis Rheum [Epub ahead of print]. Link

Li C, Yin M, Wang LE, Amos CI, Zhu D, Lee JE, Gershenwald JE, Grimm EA, Wei Q (2013, In press). Polymorphisms of nucleotide excision repair genes predict melanoma survival. J Invest Dermatol [Epub ahead of print]. Link

Li Z, Tosteson TD, Bakitas MA (2013). Joint modeling quality of life and survival using a terminal decline model in palliative care studies. Stat Med 32(8):1394-1406. Link

Liu Y, Antwi-Boampong S, Belbruno JJ, Crane MA, Tanski SE (2013, In press). Detection of secondhand cigarette smoke via nicotine using conductive polymer films. Nicotine Tob Res [Epub ahead of print].  Link

Lurie JD, Moses RA, Tosteson AN, Tosteson TD, Carragee EJ, Carrino JA, Kaiser JA, Herzog RJ (2013, In press). Magnetic resonance imaging predictors of surgical outcome in patients with lumbar intervertebral disc herniation. Spine [Epub ahead of print]. Link

Malhotra S, Kazlouskaya V, Andres C, Gui J, Elston D (2013). Diagnostic cellular abnormalities in neoplastic and non-neoplastic lesions of the epidermis: A morphological and statistical study. J Cutan Pathol [Epub ahead of print]. Link

McGowan MM, Eisenberg BL, Lewis LD, Froehlich HM, Wells WA, Eastman A, Kuemmerle NB, Rosenkrantz KM, Barth RJ, Jr., Schwartz GN, Li Z, Tosteson TD, Beaulieu BB, Jr., Kinlaw WB (2013). A proof of principle clinical trial to determine whether conjugated linoleic acid modulates the lipogenic pathway in human breast cancer tissue. Breast Cancer Res Treat 138(1):175-183. PMC Link

McNamara CR, Ahuja R, Osafo-Addo AD, Barrows D, Kettenbach A, Skidan I, Teng X, Cuny GD, Gerber S, Degterev A (2013). Akt regulates TNFalpha synthesis downstream of RIP1 Kinase Activation during Necroptosis. PloS one 8(3):e56576. Link

Molineros JE, Maiti AK, Sun C, Looger LL, Han S, Kim-Howard X, Glenn S, Adler A, Kelly JA, Niewold TB, Gilkeson GS, Brown EE, Alarcon GS, Edberg JC, Petri M, Ramsey-Goldman R, Reveille JD, Vila LM, Freedman BI, Tsao BP, Criswell LA, Jacob CO, Moore JH, Vyse TJ, Langefeld CL, Guthridge JM, Gaffney PM, Moser KL, Scofield RH, Alarcon-Riquelme ME, Williams SM, Merrill JT, James JA, Kaufman KM, Kimberly RP, Harley JB, Nath SK (2013). Admixture mapping in Lupus identifies multiple functional variants within IFIH1 sssociated with apoptosis, inflammation, and autoantibody production. PLoS Genet 9(2):e1003222. PMCID: 3575474. Link

Morgenstern M, Sargent JD, Engels RC, Scholte RH, Florek E, Hunt K, Sweeting H, Mathis F, Faggiano F, Hanewinkel R (2013). Smoking in movies and adolescent smoking initiation: longitudinal study in six European countries. Am J Prev Med 44(4):339-344. Link

Moynihan R, Glasziou P, Woloshin S, Schwartz L, Santa J, Godlee F (2013). Winding back the harms of too much medicine. Bmj 346:f1271. Link

Mulligan-Kehoe MJ (2013). Anti-angiogenic activity of rPAI-1(23) and vasa vasorum regression. Trends Cardiovasc Med. Link

Nakabayashi M, Xie W, Buckle G, Bubley G, Ernstoff MS, Walsh W, Morganstern DE, Kantoff PW, Taplin ME (2013). Long-term follow-up of a Phase II Trial of chemotherapy plus hormone therapy for biochemical relapse after definitive local therapy for prostate cancer. Urology 81(3):611-616. PMC Link

Oliver JL, Alexander MP, Norrod AG, Mullins IM, Mullins DW (2013, In press). Differential expression and TNF-mediated regulation of TNFRSF11b/osteoprotegerin production by human melanomas. Pigment Cell Melanoma Res [Epub ahead of print]. PMC Link

Olsen CM, Nagle C, Whiteman DC, Ness R, Pearce CL, Pike MC, Rossing MA, Terry K, Wu A, Risch H, Yu H, Doherty JA, Chang-Claude J, Hein R, Nickels S, Wang-Gohrke S, Goodman M, Carney ME, Matsuno RK, Lurie G, Moysich K, Kjaer SK, Jensen A, Hogdall E, Goode E, Fridley BL, Vierkant RA, Larson MC, Schildkraut J, Hoyo C, Moorman P, Weber RP, Cramer D, Vitonis AF, Bandera EV, Olsen S, Rodriguez-Rodriguez L, King M, Brinton LA, Yang H, Garcia-Closas M, Lissowska J, Anton-Culver H, Ziogas A, Gayther SA, Ramus SJ, Menon U, Gentry-Maharaj A, Webb PM (2013, In press). Obesity and risk of ovarian cancer subtypes: Evidence from the Ovarian Cancer Association Consortium. Endocr Relat Cancer [Epub ahead of print].  Link

Ording AG, Horvath-Puho E, Erichsen R, Long MD, Baron JA, Lash TL, Sorensen HT (2013). Five-year mortality in colorectal cancer patients with Ulcerative Colitis or Crohn's Disease: A nationwide population-based cohort Study. Inflamm Bowel Dis 19(4):800-805. Link

Park HJ, Hong M, Bronson RT, Israel MA, Frankel WN, Yun K (2013). Elevated Id2 expression results in precocious neural stem cell depletion and abnormal brain development. Stem Cells. Link

Park JY, Amankwah EK, Anic GM, Lin HY, Walls B, Park HY, Krebs K, Madden MH, Maddox KN, Marzban S, Fang S, Chen W, Lee JE, Wei Q, Amos CI, Messina JL, Sondak VK, Sellers TA, Egan KM (2013, In press). Gene variants in angiogenesis and lymphangiogenesis and cutaneous melanoma progression. Cancer Epidemiol Biomarkers Prev [Epub ahead of print]. Link

Patel MV, Fahey JV, Rossoll RM, Wira CR (2013, In press). Innate immunity in the vagina (Part I): Estradiol Inhibits HBD2 and Elafin Secretion by Human Vaginal epithelial cells. Am J Reprod Immunol [Epub ahead of print]. PMC Link

Pearce CL, Rossing MA, Lee AW, Ness RB, Webb PM, Chenevix-Trench G, Jordan SJ, Stram DA, Chang-Claude J, Hein R, Nickels S, Lurie G, Thompson PJ, Carney ME, Goodman MT, Moysich KB, Hogdall EV, Jensen A, Goode EL, Fridley BL, Cunningham JM, Vierkant RA, Weber RP, Ziogas A, Anton-Culver H, Gayther SA, Gentry-Maharaj A, Menon U, Ramus SJ, Brinton LA, Wentzensen N, Lissowska J, Garcia-Closas M, Massuger L, Kiemeney LA, van Altena AM, Aben KK, Berchuck A, Doherty JA, Iversen E, McGuire V, Moorman PG, Pharoah PD, Pike MC, Risch HA, Sieh W, Stram DO, Terry KL, Whittemore AS, Wu A, Schildkraut JM, Kjaer SK (2013, In press). Combined and interactive effects of environmental and GWAS-identified risk factors in ovarian cancer. Cancer Epidemiol Biomarkers Prev [Epub ahead of print]. Link

Powers KE, Heatherton TF (2013). Implicitly priming the social brain: Failure to find neural effects. PloS one 8(2):e56596. PMCID: 3577884. Link

Ran C, Liu H, Hitoshi Y, Israel MA (2013, In press). Proliferation-Independent Control of Tumor Glycolysis by PDGFR-Mediated AKT Activation. Cancer Res [Epub ahead of print]. Link

Righi V, Constantinou C, Mintzopoulos D, Khan N, Mupparaju SP, Rahme LG, Swartz HM, Szeto HH, Tompkins RG, Tzika AA (2013, In press). Mitochondria-targeted antioxidant promotes recovery of skeletal muscle mitochondrial function after burn trauma assessed by in vivo 31P nuclear magnetic resonance and electron paramagnetic resonance spectroscopy. FASEB [Epub ahead of print]. Link

Rizvia I, Anbila S, Alagic N, Cell JP, Zheng LZ, Palanisami A, Glidden MD, Pogue BW, Hasan T (2013, In press). PDT dose parameters impact tumoricidal durability and cell death pathways in a 3D ovarian cancer model. Photochem Photobiol [Epub ahead of print]. Link

Robertson JF, Ferrero JM, Bourgeois H, Kennecke H, de Boer RH, Jacot W, McGreivy J, Suzuki S, Zhu M, McCaffery I, Loh E, Gansert JL, Kaufman PA (2013). Ganitumab with either exemestane or fulvestrant for postmenopausal women with advanced, hormone-receptor-positive breast cancer: A randomised, controlled, double-blind, phase 2 trial. Lancet Oncol 14(3):228-235. Link

Rodriguez-Garcia M, Patel MV, Wira CR (2013). Innate and adaptive anti-HIV immune responses in the female reproductive tract. J Reprod Immunol 97(1):74-84. 3581821: PMC3581821 Link

Schell AM, Petras M, Szczepiorkowski ZM, Ornstein DL (2013, In press). Refractory heparin induced thrombocytopenia with thrombosis (HITT) treated with therapeutic plasma exchange and rituximab as adjuvant therapy. Transfus Apher Sci [Epub ahead of print]. Link

Shabaneh TB, Downey SL, Goddard AL, Screen M, Lucas MM, Eastman A, Kisselev AF (2013). Molecular basis of differential sensitivity of myeloma cells to clinically relevant bolus treatment with bortezomib. PloS one 8(2):e56132. PMCID: 3584083. Link

Spitz MR, Amos CI, Land S, Wu X, Dong Q, Wenzlaff AS, Schwartz AG (2013). Role of selected genetic variants in lung cancer risk in African Americans. J Thor Oncol   8(4):391-397. Link

Sporn MB, Liby KT (2013, In press). Is lycopene an effective agent for preventing prostate cancer? Cancer Prev Res [Epub ahead of print]. Link

Teno JM, Gozalo PL, Bynum JP, Leland NE, Miller SC, Morden NE, Scupp T, Goodman DC, Mor V (2013). Change in end-of-life care for Medicare beneficiaries: Site of death, place of care, and health care transitions in 2000, 2005, and 2009. JAMA   309(5):470-477. Link

Troisi R, Hyer M, Hatch EE, Titus-Ernstoff L, Palmer JR, Strohsnitter WC, Herbst AL, Adam E, Hoover RN (2013, In press). Medical conditions among adult offspring prenatally exposed to Diethylstilbestrol. Epidemiology [Epub ahead of print]. Link

Urbanowicz RJ, Andrew AS, Karagas MR, Moore JH (2013, In press). Role of genetic heterogeneity and epistasis in bladder cancer susceptibility and outcome: A learning classifier system approach. JAMIA [Epub ahead of print]. Link

Wennberg JE, Staiger DO, Sharp SM, Gottlieb DJ, Bevan G, McPherson K, Welch HG (2013). Observational intensity bias associated with illness adjustment: Cross sectional analysis of insurance claims. Bmj 346:f549. PMCID: 3578417. Link

Win AK, Hopper JL, Buchanan DD, Young JP, Tenesa A, Dowty JG, Giles GG, Goldblatt J, Winship I, Boussioutas A, Young GP, Parry S, Baron JA, Duggan D, Gallinger S, Newcomb PA, Haile RW, Marchand LL, Lindor NM, Jenkins MA (2013, In press). Are the common genetic variants associated with colorectal cancer risk for DNA mismatch repair gene mutation carriers? Eur J Cancer [Epub ahead of print]. Link

Wrzesinski SH, Fisher JL, Ernstoff MS (2013) Genetic profiles of Plasmacytoid (BDCA-4 expressing) DC Subtypes-Clues to DC subtype function in vivo. Exp Hematol Oncol 2(1):8. PMC Link

Yatawara A, Wilson JL, Taylor L, Polgar P, Mierke DF (2013, In press). C-terminus of ET(A) /ET(B) receptors regulate endothelin-1 signal transmission. J Pept Sci [Epub ahead of print]. Link

Yatawara AK, Hodoscek M, Mierke DF (2013, In press). Ligand binding site identification by higher dimension molecular dynamics. J Chem Inf Model [Epub ahead of print]. Link