Recent Publications

Abou Tayoun AN, Tunkey CD, Pugh TJ, Ross T, Shah M, Lee CC, Harkins TT, Wells WA, Tafe LJ, Amos CI, Tsongalis GJ (2013). A Comprehensive Assay for CFTR Mutational Analysis Using Next-Generation Sequencing. Clin Chem [Epub ahead of print]. Link

Adachi-Mejia AM, Longacre MR, Skatrud-Mickelson M, Li Z, Purvis LA, Titus LJ, Beach ML, Dalton MA (2013). Variation in access to sugar-sweetened beverages in vending machines across rural, town and urban high schools. Public Health 127(5):485-491. Link

Adams SV, Ahnen DJ, Baron JA, Campbell PT, Gallinger S, Grady WM, Lemarchand L, Lindor NM, Potter JD, Newcomb PA (2013). Survival after inflammatory bowel disease-associated colorectal cancer in the Colon Cancer Family Registry. World J Gastroenterol 19(21):3241-3248. PMCID: 3671075. Link

Anderson JC, Robertson DJ (2013). Serrated polyps misclassified: the value of looking back and the impact of looking forward. Gastroenterol 144(7):1564-1566. Link

Argos M, Rahman M, Parvez F, Dignam J, Islam T, Quasem I, S KH, A TH, Hossain Z, T IP, Rakibuz-Zaman M, Sarwar G, La Porte P, Harjes J, Anton K, Kibriya MG, Jasmine F, Khan R, Kamal M, Shea CR, Yunus M, Baron JA, Ahsan H (2013). Baseline comorbidities in a skin cancer prevention trial in Bangladesh. Eur  J Clin Invest 43(6):579-588. Link

Artinger EL, Mishra BP, Zaffuto KM, Li BE, Chung EK, Moore AW, Chen Y, Cheng C, Ernst P (2013). An MLL-dependent network sustains hematopoiesis. Proc Natl Acad Sci U S A [Epub ahead of link]. Link

Baird JR, Fox BA, Sanders KL, Lizotte PH, Cubillos-Ruiz JR, Scarlett UK, Rutkowski MR, Conejo-Garcia JR, Fiering S, Bzik DJ (2013). Avirulent Toxoplasma gondii generates therapeutic antitumor immunity by reversing immunosuppression in the ovarian cancer microenvironment. Cancer Res [Epub ahead of print]. Link

Bates DJ, Danilov AV, Lowrey CH, Eastman A (2013). Vinblastine rapidly induces Noxa and acutely sensitizes primary chronic lymphocytic leukemia cells to ABT-737. Mol Cancer Ther [Epub ahead of print]. Link

Bergamini E, Demidenko E, Sargent JD (2013). Trends in Tobacco and Alcohol Brand Placements in Popular US Movies, 1996 Through 2009. JAMA Pedi 1-6. Link

Biswas S, Atienza P, Chipman J, Hughes K, Barrera AM, Amos CI, Arun B, Parmigiani G (2013). Simplifying clinical use of the genetic risk prediction model BRCAPRO. Breast Cancer Res Treat 139(2):571-579. Link

Black CC, Turk MJ, Dragnev K, Rigas JR (2013). Adenocarcinoma Contains More Immune Tolerance Regulatory T-cell Lymphocytes (Versus Squamous Carcinoma) in Non-small-Cell Lung Cancer. Lung 191(3):265-270. Link

Burchard PR, Malhotra S, Kaur P, Tsongalis GJ (2013). Detection of the FCGR3a polymorphism using a real-time polymerase chain reaction assay. Cancer Genet 206(4):130-4. Link

Cantu RV, Coe MP, Pober DM, Byock IR (2013). Orthopedic grand rounds can change resident practice. Am J Ortho 42(5):215-219. Link

Dionne-Odom J, Karita E, Kilembe W, Henderson F, Vwalika B, Bayingana R, Li Z, Mulenga J, Chomba E, Del Rio C, Khu NH, Tichacek A, Allen S (2013). Author Response to Comments on "Syphilis Treatment Response Among HIV Discordant Couples in Zambia and Rwanda". Clin Infect Dis [Epub ahead of print]. Link

Drake KM, Longacre MR, Dalton MA, Langeloh G, Peterson KE, Titus LJ, Beach ML (2013). Two-Method Measurement for Adolescent Obesity Epidemiology: Reducing the Bias in Self-Report of Height and Weight. J Adolesc Health [Epub ahead of print]. Link

Fellows A, Deng B, Mierke D, Robey RB, Nichols RC (2013). Peptides modeled on the RGG domain of AUF1/hnRNP-D regulate 3' UTR-dependent gene expression. Int Immunopharmacol [Epub ahead of print]. Link

Gellad WF, Donohue JM, Zhao X, Mor MK, Thorpe CT, Smith J, Good CB, Fine MJ, Morden NE (2013). Brand-Name Prescription Drug Use Among Veterans Affairs and Medicare Part D Patients With Diabetes: A National Cohort Comparison. Ann Intern Med [Epub ahead of print]. Link

Guillemin F, Martinez L, Calvert M, Cooper C, Ganiats T, Gitlin M, Horne R, Marciniak A, Pfeilschifter J, Shepherd S, Tosteson A, Wade S, Macarios D, Freemantle N (2013). Fear of falling, fracture history, and comorbidities are associated with health-related quality of life among European and US women with osteoporosis in a large international study. Osteoporos Int [Epub ahead of print]. Link

Hahn CK, Lowrey CH (2013). Eukaryotic initiation factor 2alpha phosphorylation mediates fetal hemoglobin induction through a post-transcriptional mechanism. Blood [Epub ahead of print]. Link

Hanewinkel R, Sargent JD, Karlsdottir S, Jonsson SH, Mathis F, Faggiano F, Poelen EA, Scholte R, Florek E, Sweeting H, Hunt K, Morgenstern M (2013). High youth access to movies that contain smoking in Europe compared with the USA. Tobacco Control 22(4):241-4. Link

Hu T, Andrew AS, Karagas MR, Moore JH (2013). Statistical epistasis networks reduce the computational complexity of searching three-locus genetic models. Pac Symp Biocomput 397-408. PMCID: 3587773. Link

Hu Z, Zhang W, Usherwood EJ (2013). Regulatory CD8+ T Cells Associated with Erosion of Immune Surveillance in Persistent Virus Infection Suppress In Vitro and Have a Reversible Proliferative Defect. J Immun [Epub ahead of print]. Link

Johnson CM, Wei C, Ensor JE, Smolenski DJ, Amos CI, Levin B, Berry DA (2013). Meta-analyses of colorectal cancer risk factors. Cancer Causes Control 24(6):1207-1222. Link

Kleen JK, Scott RC, Holmes GL, Roberts DW, Rundle MM, Testorf M, Lenck-Santini PP, Jobst BC (2013). Hippocampal interictal epileptiform activity disrupts cognition in humans. Neurology [Epub ahead of print]. Link

Koestler DC, Avissar-Whiting M, Houseman EA, Karagas MR, Marsit CJ (2013). Differential DNA Methylation in Umbilical Cord Blood of Infants Exposed to Low Levels of Arsenic. Environ Health Perspect [Epub ahead of print]. Link

Koutros S, Baris D, Fischer A, Tang W, Garcia-Closas M, Karagas MR, Schwenn M, Johnson A, Figueroa J, Waddell R, Prokunina-Olsson L, Rothman N, Silverman DT (2013). Differential urinary specific gravity as a molecular phenotype of the bladder cancer genetic association in the urea transporter gene, SLC14A1. Int J Cancer [Epub ahead of print]. Link

Langevin SM, Michaud DS, Marsit CJ, Nelson HH, Birnbaum AE, Eliot M, Christensen BC, McClean MD, Kelsey KT (2013). Gastric Reflux Is an Independent Risk Factor for Laryngopharyngeal Carcinoma. Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology [Epub ahead of print]. Link

Laughney AM, Krishnaswamy V, Rice TB, Cuccia DJ, Barth RJ, Tromberg BJ, Paulsen KD, Pogue BW, Wells WA (2013). System analysis of spatial frequency domain imaging for quantitative mapping of surgically resected breast tissues. Journal of biomedical optics 18(3):036012. PMCID: 3605471. Link

Lester BM, Conradt E, Marsit CJ (2013). Epigenetic Basis for the Development of Depression in Children. Clinical obstetrics and gynecology [Epub ahead of print]. Link

Liang X, Crepeau RL, Zhang W, Speck SH, Usherwood EJ (2013). CD4 and CD8 T cells directly recognize murine gammaherpesvirus 68-immortalized cells and prevent tumor outgrowth. J Virology 87(10):6051-4. PMCID: 3648166. Link

Lurie JD, Moses RA, Tosteson AN, Tosteson TD, Carragee EJ, Carrino JA, Kaiser JA, Herzog RJ (2013). Magnetic resonance imaging predictors of surgical outcome in patients with lumbar intervertebral disc herniation. Spine 38(14):1216-1225. PMCID: 3683115. Link

MA OC, Green WR (2013). The role of indoleamine 2,3-dioxygenase in LP-BPM5 murine retroviral disease progression. Virology journal 10(1):154. Link

Ma T, Dong JP, Sekula DJ, Fei DL, Lamph WW, Henderson M, Lu Y, Blumen S, Freemantle SJ, Dmitrovsky E (2013). Repression of exogenous gene expression by the retinoic acid target gene G0S2. International journal of oncology 42(5):1743-1753. PMCID: 3661193. Link

Ma T, Galimberti F, Erkmen CP, Memoli V, Chinyengetere F, Sempere L, Beumer JH, Anyang BN, Nugent W, Johnstone D, Tsongalis GJ, Kurie JM, Li H, Direnzo J, Guo Y, Freemantle SJ, Dragnev KH, Dmitrovsky E (2013). Comparing Histone Deacetylase Inhibitor Responses in Genetically Engineered Mouse Lung Cancer Models and a Window of Opportunity Trial in Lung Cancer Patients. Molecular cancer therapeutics. Link

Malley JD, Dasgupta A, Moore JH (2013). The limits of p-values for biological data mining. BioData mining 6(1):10. PMCID: 3668262. Link

Mehr CR, Gupta R, von Recklinghausen FM, Szczepiorkowski ZM, Dunbar NM (2013). Balancing risk and benefit: Maintenance of a thawed Group A plasma inventory for trauma patients requiring massive transfusion. The journal of trauma and acute care surgery 74(6):1425-1431. Link

Moreno-Aspitia A, Hillman DW, Dyar SH, Tenner KS, Gralow J, Kaufman PA, Davidson NE, Lafky JM, Reinholz MM, Lingle WL, Kutteh LA, Carney WP, Dueck AC, Perez EA (2013). Soluble human epidermal growth factor receptor 2 (HER2) levels in patients with HER2-positive breast cancer receiving chemotherapy with or without trastuzumab: Results from North Central Cancer Treatment Group adjuvant trial N9831. Cancer [Epub ahead of print]. Link

Moseley JB (2013). An expanded view of the eukaryotic cytoskeleton. Molecular biology of the cell 24(11):1615-8. PMCID: 3667716. Link

Newcomb PA, Kampman E, Trentham-Dietz A, Egan KM, Titus LJ, Baron JA, Hampton JM, Passarelli MN, Willett WC (2013). Alcohol consumption before and after breast cancer diagnosis: associations with survival from breast cancer, cardiovascular disease, and other causes. Journal of clinical oncology : official journal of the American Society of Clinical Oncology 31(16):1939-1946. Link

O'Donnell JF (2013). Passing the torch. Journal of cancer education : the official journal of the American Association for Cancer Education 28(2):211-222. Link

Onega T, Anderson ML, Miglioretti DL, Buist DS, Geller B, Bogart A, Smith RA, Sickles EA, Monsees B, Bassett L, Carney PA, Kerlikowske K, Yankaskas BC (2013). Establishing a gold standard for test sets: variation in interpretive agreement of expert mammographers. Academic radiology 20(6):731-739. Link

Ornstein DL (2013). Intracellular and extracellular immunoglobulin crystals assuming a multitude of geometric shapes in an IgG-lambda plasma cell neoplasm. American journal of hematology [Epub ahead of print]. Link

Pan Q, Hu T, Moore JH (2013). Epistasis, complexity, and multifactor dimensionality reduction. Methods in molecular biology 1019:465-477. Link

Patankar YR, Lovewell RR, Poynter ME, Jyot J, Kazmierczak BI, Berwin B (2013). Flagellar Motility Is a Key Determinant of the Magnitude of the Inflammasome Response to Pseudomonas aeruginosa. Infection and immunity 81(6):2043-2052. PMCID: 3676033. Link

Ransohoff DF, Pignone M, Sox HC (2013). Development of trustworthy practice guidelines--reply. JAMA : the journal of the American Medical Association 309(18):1890-1891. Link

Ransohoff DF, Sox HC (2013). Guidelines for Guidelines: Measuring Trustworthiness. Journal of clinical oncology : official journal of the American Society of Clinical Oncology [Epub ahead of print]. Link

Rice MS, Murphy MA, Vitonis AF, Cramer DW, Titus LJ, Tworoger SS, Terry KL (2013). Tubal ligation, hysterectomy, and epithelial ovarian cancer in the New England case-control study. International journal of cancer Journal international du cancer [Epub ahead of print]. Link

Rigby WF, Mease PJ, Olech E, Ashby M, Tole S (2013). Safety of rituximab in combination with other biologic disease-modifying antirheumatic drugs in rheumatoid arthritis: an open-label study. The Journal of rheumatology 40(5):599-604. Link

Righi V, Constantinou C, Mintzopoulos D, Khan N, Mupparaju SP, Rahme LG, Swartz HM, Szeto HH, Tompkins RG, Tzika AA (2013). Mitochondria-targeted antioxidant promotes recovery of skeletal muscle mitochondrial function after burn trauma assessed by in vivo 31P nuclear magnetic resonance and electron paramagnetic resonance spectroscopy. FASEB journal : official publication of the Federation of American Societies for Experimental Biology 27(6):2521-2530. PMCID: 3659352. Link

Savage SA, Mirabello L, Wang Z, Gastier-Foster JM, Gorlick R, Khanna C, Flanagan AM, Tirabosco R, Andrulis IL, Wunder JS, Gokgoz N, Patino-Garcia A, Sierrasesumaga L, Lecanda F, Kurucu N, Ilhan IE, Sari N, Serra M, Hattinger C, Picci P, Spector LG, Barkauskas DA, Marina N, de Toledo SR, Petrilli AS, Amary MF, Halai D, Thomas DM, Douglass C, Meltzer PS, Jacobs K, Chung CC, Berndt SI, Purdue MP, Caporaso NE, Tucker M, Rothman N, Landi MT, Silverman DT, Kraft P, Hunter DJ, Malats N, Kogevinas M, Wacholder S, Troisi R, Helman L, Fraumeni JF, Jr., Yeager M, Hoover RN, Chanock SJ (2013). Genome-wide association study identifies two susceptibility loci for osteosarcoma. Nature genetics [Epub ahead of print].. Link

Setiawan VW, Yang HP, Pike MC, McCann SE, Yu H, Xiang YB, Wolk A, Wentzensen N, Weiss NS, Webb PM, van den Brandt PA, van de Vijver K, Thompson PJ, The Australian National Endometrial Cancer Study G, Strom BL, Spurdle AB, Soslow RA, Shu XO, Schairer C, Sacerdote C, Rohan TE, Robien K, Risch HA, Ricceri F, Rebbeck TR, Rastogi R, Prescott J, Polidoro S, Park Y, Olson SH, Moysich KB, Miller AB, McCullough ML, Matsuno RK, Magliocco AM, Lurie G, Lu L, Lissowska J, Liang X, Lacey JV, Jr., Kolonel LN, Henderson BE, Hankinson SE, Hakansson N, Goodman MT, Gaudet MM, Garcia-Closas M, Friedenreich CM, Freudenheim JL, Doherty J, De Vivo I, Courneya KS, Cook LS, Chen C, Cerhan JR, Cai H, Brinton LA, Bernstein L, Anderson KE, Anton-Culver H, Schouten LJ, Horn-Ross PL (2013). Type I and II Endometrial Cancers: Have They Different Risk Factors? Journal of clinical oncology : Official journal of the American Society of Clinical Oncology [Epub ahead of print]. Link

Smith AK, Thai JN, Bakitas MA, Meier DE, Spragens LH, Temel JS, Weissman DE, Rabow MW (2013). The diverse landscape of palliative care clinics. Journal of palliative medicine 16(6):661-668. PMCID: 3668622. Link

Soundararajan M, Roos AK, Savitsky P, Filippakopoulos P, Kettenbach AN, Olsen JV, Gerber SA, Eswaran J, Knapp S, Elkins JM (2013). Structures of Down Syndrome Kinases, DYRKs, Reveal Mechanisms of Kinase Activation and Substrate Recognition. Structure 21(6):986-996. PMCID: 3677093. Link

Spaniolas K, Rothstein RI, Trus TL (2013). Transgastric-assisted endoscopic fundoplication. Case reports in medicine 2013:280628. PMCID: 3666435. Link

Stanger C, Ryan SR, Delhey LM, Thrailkill K, Li Z, Li Z, Budney AJ (2013). A Multicomponent Motivational Intervention to Improve Adherence Among Adolescents With Poorly Controlled Type 1 Diabetes: A Pilot Study. Journal of pediatric psychology [Epub ahead of print]. Link

Talukdar T, Moore JH, Diamond SG (2013). Continuous correction of differential path length factor in near-infrared spectroscopy. Journal of biomedical optics 18(5):56001. Link

Terry KL, Karageorgi S, Shvetsov YB, Merritt MA, Lurie G, Thompson P, Carney ME, Weber RP, Akushevich L, Lo-Ciganic WH, Cushing-Haugen KL, Sieh W, Moysich KB, Doherty JA, Nagle CM, Berchuck A, Pearce CL, Pike M, Ness RB, Webb P, Rossing MA, Schildkraut J, Risch HA, Goodman MT (2013). Genital powder use and risk of ovarian cancer: a pooled analysis of 8,525 cases and 9,859 controls. Cancer prevention research [Epub ahead of print]. Link

Tripathy D, Kaufman PA, Brufsky AM, Mayer M, Yood MU, Yoo B, Quah C, Yardley D, Rugo HS (2013). First-Line Treatment Patterns and Clinical Outcomes in Patients With HER2-Positive and Hormone Receptor-Positive Metastatic Breast Cancer From registHER. The oncologist 18(5):501-510. Link

Troisi R, Doody DR, Mueller BA (2013). A linked-registry study of gestational factors and subsequent breast cancer risk in the mother. Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology 22(5):835-847. PMCID: 3650095. Link

Tsongalis GJ, Chao E, Hagenkord JM, Hambuch T, Moore JH (2013). Bioinformatics: What the Clinical Laboratorian Needs to Know and Prepare For. Clinical chemistry [Epub ahead of print].  Link

Tsongalis GJ, Lockwood CM (2013). Clinical utility of miRNAs in diagnosis and prognosis. Clinical biochemistry 46(10-11):839. Link

Urbanowicz RJ, Andrew AS, Karagas MR, Moore JH (2013). Role of genetic heterogeneity and epistasis in bladder cancer susceptibility and outcome: a learning classifier system approach. Journal of the American Medical Informatics Association : JAMIA 20(4):603-612. Link

Wan Y, Borsic A, Heaney J, Seigne J, Schned A, Baker M, Wason S, Hartov A, Halter R (2013). Transrectal electrical impedance tomography of the prostate: Spatially coregistered pathological findings for prostate cancer detection. Medical physics 40(6):063102. Link

Xie G, Roshandel D, Sherva R, Monach PA, Lu Y, Kung T, Carrington K, Zhang SS, Pulit SL, Ripke S, Carette S, Dellaripa PF, Edberg JC, Hoffman GS, Khalidi N, Langford CA, Mahr AD, St Clair EW, Seo P, Specks U, Spiera RF, Stone JH, Ytterberg SR, Raychaudhuri S, de Bakker PI, Farrer LA, Amos CI, Merkel PA, Siminovitch KA (2013). Granulomatosis with polyangiitis (Wegener's) is associated with HLA-DPB1*04 and SEMA6A gene variants: Evidence from genome-wide analysis. Arthritis and rheumatism [Epub ahead of print].  Link