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Recent Publications for May 2014

Andrew AS, Gui J, Hu T, Wyszynski A, Marsit CJ, Kelsey KT, Schned AR, Tanyos SA, Pendleton EM, Ekstrom RM, Li Z, Zens MS, Borsuk M, Moore JH, Karagas MR (2014). Genetic polymorphisms modify bladder cancer recurrence and survival in a USA population-based prognostic study. BJU international. [Epub ahead of print] Link

Arron ST, Dimon MT, Li Z, Johnson ME, T AW, Feeney L, J GA, Lafyatis R, Whitfield ML (2014). High Rhodotorula Sequences in Skin Transcriptome of Patients with Diffuse Systemic Sclerosis. The Journal of investigative dermatology.[Epub ahead of print] Link

Berman MI, Buckey JC, Jr., Hull JG, Linardatos E, Song SL, McLellan RK, Hegel MT (2014). Feasibility study of an interactive multimedia electronic problem solving treatment program for depression: a preliminary uncontrolled trial. Behavior therapy 45(3):358-375. Link

Bernhardt AM, Wilking C, Gottlieb M, Emond J, Sargent JD (2014). Children's Reaction to Depictions of Healthy Foods in Fast-Food Television Advertisements. JAMA pediatrics. [Epub ahead of print] Link

Biancolella M, Fortini BK, Tring S, Plummer SJ, Mendoza-Fandino GA, Hartiala J, Hitchler MJ, Yan C, Schumacher FR, Conti DV, Edlund CK, Noushmehr H, Coetzee SG, Bresalier RS, Ahnen DJ, Barry EL, Berman BP, Rice JC, Coetzee GA, Casey G (2014). Identification and characterization of functional risk variants for colorectal cancer mapping to chromosome 11q23.1. Human molecular genetics 23(8):2198-209. Link

Brown JR, Sox HC, Goodman DC (2014). Financial incentives to improve quality: skating to the puck or avoiding the penalty box? JAMA: the journal of the American Medical Association 311(10):1009-1010. Link

Chen X, Foy M, Kimmel M, Gorlova OY (2014). Modeling the natural history and detection of lung cancer based on smoking behavior. PloS one 9(4):e93430. PMCID: 3976286. Link

Choi NG, Hegel MT, Marti N, Marinucci ML, Sirrianni L, Bruce ML (2014). Telehealth problem-solving therapy for depressed low-income homebound older adults. The American journal of geriatric psychiatry: official journal of the American Association for Geriatric Psychiatry 22(3):263-271. PMCID: 3519946. Link

Daniels MS, Babb SA, King RH, Urbauer DL, Batte BA, Brandt AC, Amos CI, Buchanan AH, Mutch DG, Lu KH (2014). Underestimation of Risk of a BRCA1 or BRCA2 Mutation in Women With High-Grade Serous Ovarian Cancer by BRCAPRO: A Multi-Institution Study. Journal of clinical oncology : official journal of the American Society of Clinical Oncology. [Epub ahead of print] Link

De Abreu FB, Schwartz GN, Wells WA, Tsongalis GJ (2014). Personalized therapy for breast cancer. Clinical genetics. [Epub ahead of print] Link

Earp MA, Kelemen LE, Magliocco AM, Swenerton KD, Chenevix-Trench G, Australian Cancer S, Australian Ovarian Cancer Study G, Lu Y, Hein A, Ekici AB, Beckmann MW, Fasching PA, Lambrechts D, Despierre E, Vergote I, Lambrechts S, Doherty JA, Rossing MA, Chang-Claude J, Rudolph A, Friel G, Moysich KB, Odunsi K, Sucheston-Campbell L, Lurie G, Goodman MT, Carney ME, Thompson PJ, Runnebaum IB, Durst M, Hillemanns P, Dork T, Antonenkova N, Bogdanova N, Leminen A, Nevanlinna H, Pelttari LM, Butzow R, Bunker CH, Modugno F, Edwards RP, Ness RB, du Bois A, Heitz F, Schwaab I, Harter P, Karlan BY, Walsh C, Lester J, Jensen A, Kjaer SK, Hogdall CK, Hogdall E, Lundvall L, Sellers TA, Fridley BL, Goode EL, Cunningham JM, Vierkant RA, Giles GG, Baglietto L, Severi G, Southey MC, Liang D, Wu X, Lu K, Hildebrandt MA, Levine DA, Bisogna M, Schildkraut JM, Iversen ES, Weber RP, Berchuck A, Cramer DW, Terry KL, Poole EM, Tworoger SS, Bandera EV, Chandran U, Orlow I, Olson SH, Wik E, Salvesen HB, Bjorge L, Halle MK, van Altena AM, Aben KK, Kiemeney LA, Massuger LF, Pejovic T, Bean YT, Cybulski C, Gronwald J, Lubinski J, Wentzensen N, Brinton LA, Lissowska J, Garcia-Closas M, Dicks E, Dennis J, Easton DF, Song H, Tyrer JP, Pharoah PD, Eccles D, Campbell IG, Whittemore AS, McGuire V, Sieh W, Rothstein JH, Flanagan JM, Paul J, Brown R, Phelan CM, Risch HA, McLaughlin JR, Narod SA, Ziogas A, Anton-Culver H, Gentry-Maharaj A, Menon U, Gayther SA, Ramus SJ, Wu AH, Pearce CL, Pike MC, Dansonka-Mieszkowska A, Rzepecka IK, Szafron LM, Kupryjanczyk J, Cook LS, Le ND, Brooks-Wilson A, Ovarian Cancer Association C (2014). Genome-wide association study of subtype-specific epithelial ovarian cancer risk alleles using pooled DNA. Human genetics 133(5):481-497. Link

Farzan SF, Karagas MR, Christensen BC, Li Z, Kuriger JK, Nelson HH, New Hampshire Skin Cancer S (2014). RNASEL and MIR146A SNP-SNP Interaction as a Susceptibility Factor for Non-Melanoma Skin Cancer. PloS one 9(4):e93602. PMCID: 3974770. Link

Frost HR, Moore JH (2014). Optimization of gene set annotations via entropy minimization over variable clusters (EMVC). Bioinformatics. [Epub ahead of print]  Link

Gawande AA, Colla CH, Halpern SD, Landon BE (2014). Avoiding low-value care. The New England journal of medicine 370(14):e21. Link

Gifford AH, Alexandru DM, Li Z, Dorman DB, Moulton LA, Price KE, Hampton TH, Sogin ML, Zuckerman JB, Parker HW, Stanton BA, O'Toole GA (2014). Iron supplementation does not worsen respiratory health or alter the sputum microbiome in cystic fibrosis. Journal of cystic fibrosis: official journal of the European Cystic Fibrosis Society 13(3):311-318. PMCID: 3972336. Link

Gilbert-Diamond D, Li Z, Adachi-Mejia AM, McClure AC, Sargent JD (2014). Association of a Television in the Bedroom With Increased Adiposity Gain in a Nationally Representative Sample of Children and Adolescents. JAMA pediatrics. [Epub ahead of print] Link

Godbersen JC, Humphries LA, Danilova OV, Kebbekus PE, Brown JR, Eastman A, Danilov AV (2014). The Nedd8-Activating Enzyme Inhibitor MLN4924 Thwarts Microenvironment-Driven NF-kappaB Activation and Induces Apoptosis in Chronic Lymphocytic Leukemia B Cells. Clinical cancer research: an official journal of the American Association for Cancer Research 20(6):1576-1589. PMCID: 3960291. Link

Gorlov IP, Yang JY, Byun J, Logothetis C, Gorlova OY, Do KA, Amos C (2014). How to get the most from microarray data: advice from reverse genomics. BMC genomics 15(1):223. Link

Gorlova O, Fedorov A, Logothetis C, Amos C, Gorlov I (2014). Genes with a large intronic burden show greater evolutionary conservation on the protein level. BMC evolutionary biology 14(1):50. Link

Guo Y, Lee YC, Brown C, Zhang W, Usherwood E, Noelle RJ (2014). Dissecting the role of retinoic Acid receptor isoforms in the CD8 response to infection. Journal of immunology 192(7):3336-3344. Link
Hanoch Y, Miron-Shatz T, Rolison JJ, Ozanne E (2014). Understanding of BRCA1/2 genetic tests results: the importance of objective and subjective numeracy. Psycho-oncology. [Epub ahead of print]  Link

Hart KM, Usherwood EJ, Berwin BL (2014). CXCR1 delineates temporally and functionally distinct subsets of myeloid-derived suppressor cells in a mouse model of ovarian cancer. Immunology and cell biology. [Epub ahead of print] Link

Havrda MC, Paolella BR, Ran C, Jering KS, Wray CM, Sullivan JM, Nailor A, Hitoshi Y, Israel MA (2014). Id2 Mediates Oligodendrocyte Precursor Cell Maturation Arrest and Is Tumorigenic in a PDGF-Rich Microenvironment. Cancer research 74(6):1822-1832. Link

Hochberger J, Koehler P, Wedi E, Gluer S, Rothstein RI, Niemann H, Hilfiker A, Gonzalez S, Kruse E (2014). Transplantation of mucosa from stomach to esophagus to prevent stricture after circumferential endoscopic submucosal dissection of early squamous cell. Gastroenterology 146(4):906-909. Link

Hou H, Khan N, Lariviere J, Hodge S, Chen EY, Jarvis LA, Eastman A, Williams BB, Kuppusamy P, Swartz HM (2014). Skeletal Muscle and Glioma Oxygenation by Carbogen Inhalation in Rats: A Longitudinal Study by EPR Oximetry Using Single-Probe Implantable Oxygen Sensors. Advances in experimental medicine and biology 812:97-103. Link

Hu T, Pan Q, Andrew AS, Langer JM, Cole MD, Tomlinson CR, Karagas MR, Moore JH (2014). Functional genomics annotation of a statistical epistasis network associated with bladder cancer susceptibility. BioData mining 7(1):5. Link

Huggett MT, Jermyn M, Gillams A, Illing R, Mosse S, Novelli M, Kent E, Bown SG, Hasan T, Pogue BW, Pereira SP (2014). Phase I/II study of verteporfin photodynamic therapy in locally advanced pancreatic cancer. British journal of cancer 110(7):1698-1704. PMCID: 3974098. Link

Jarvis LA, Zhang R, Gladstone DJ, Jiang S, Hitchcock W, Friedman OD, Glaser AK, Jermyn M, Pogue BW (2014). Cherenkov Video Imaging Allows for the First Visualization of Radiation Therapy in Real Time. International journal of radiation oncology, biology, physics. [Epub ahead of print] Link

Jermyn M, Davis SC, Dehghani H, Huggett MT, Hasan T, Pereira SP, Bown SG, Pogue BW (2014). CT contrast predicts pancreatic cancer treatment response to verteporfin-based photodynamic therapy. Physics in medicine and biology 59(8):1911-1921. Link

Ji S, Zhao W, Li Z, McAllister TW (2014). Head impact accelerations for brain strain-related responses in contact sports: a model-based investigation. Biomechanics and modeling in mechanobiology. [Epub ahead of print] Link

Johnson NM, Egner PA, Baxter VK, Sporn MB, Wible RS, Sutter TR, Groopman JD, Kensler TW, Roebuck BD (2014). Complete protection against aflatoxin B1-induced liver cancer with triterpenoid: DNA adduct dosimetry, molecular signature and genotoxicity threshold. Cancer prevention research. [Epub ahead of print] Link

Kabeche R, Roguev A, Krogan NJ, Moseley JB (2014). A Pil1-Sle1-Syj1-Tax4 functional pathway links eisosomes with PI(4,5)P2 regulation. Journal of cell science 127(Pt 6):1318-1326. Link
Kahi CJ, Myers LJ, Slaven JE, Haggstrom D, Pohl H, Robertson DJ, Imperiale TF (2014). Lower endoscopy reduces colorectal cancer incidence in older individuals. Gastroenterology 146(3):718-725 e3. Link

Khan N, Hou H, Hodge S, Kuppusamy M, Chen EY, Eastman A, Kuppusamy P, Swartz HM (2014). Recurrent low-dose chemotherapy to inhibit and oxygenate head and neck tumors. Advances in experimental medicine and biology 812:105-111. Link

Kumar B, Yadav A, Hideg K, Kuppusamy P, Teknos TN, Kumar P (2014). A novel curcumin analog (h-4073) enhances the therapeutic efficacy of Cisplatin treatment in head and neck cancer. PloS one 9(3):e93208. PMCID: 3968069. Link

Langevin SM, Houseman EA, Accomando WP, Koestler DC, Christensen BC, Nelson HH, Karagas MR, Marsit CJ, Wiencke JK, Kelsey KT (2014). Leukocyte-adjusted epigenome-wide association studies of blood from solid tumor patients. Epigenetics: official journal of the DNA Methylation Society 9(6). Link

Le Mercier I, Chen W, Lines JL, Day M, Li J, Sergent P, Noelle RJ, Wang L (2014). VISTA Regulates the Development of Protective Antitumor Immunity. Cancer research 74(7):1933-1944. Link

Li D, Sulovari A, Cheng C, Zhao H, Kranzler HR, Gelernter J (2014). Association of gamma-aminobutyric acid A receptor alpha2 gene (GABRA2) with alcohol use disorder. Neuropsychopharmacology: official publication of the American College of Neuropsychopharmacology 39(4):907-918. PMCID: 3924525. Link

Lines JL, Pantazi E, Mak J, Sempere LF, Wang L, O'Connell S, Ceeraz S, Suriawinata AA, Yan S, Ernstoff MS, Noelle R (2014). VISTA Is an Immune Checkpoint Molecule for Human T Cells. Cancer research 74(7):1924-1932. PMCID: 3979527. Link

Lovewell RR, Hayes SM, O'Toole GA, Berwin B (2014). Pseudomonas aeruginosa flagellar motility activates the phagocyte PI3K/Akt pathway to induce phagocytic engulfment. American journal of physiology Lung cellular and molecular physiology 306(7):L698-707. PMCID: 3962627. Link

Lovewell RR, Hayes SM, O'Toole GA, Berwin B (2014). Pseudomonas aeruginosa flagellar motility activates the phagocyte PI3K/Akt pathway to induce phagocytic engulfment. American journal of physiology Lung cellular and molecular physiology 306(7):L698-707. PMCID: 3962627. Link

Lovewell RR, Patankar YR, Berwin B (2014). Mechanisms of phagocytosis and host clearance of Pseudomonas aeruginosa. American journal of physiology Lung cellular and molecular physiology 306(7):L591-603. Link

Ma J, Xiong M, You M, Lozano G, Amos CI (2014). Genome-wide association tests of inversions with application to psoriasis. Human genetics. Link

Martin BI, Lurie JD, Tosteson AN, Deyo RA, Tosteson T, Weinstein J, Mirza SK (2014). Indications for Spine Surgery: Validation of an Administrative Coding Algorithm to Classify Degenerative Diagnoses. Spine. Link
Mecchella JN, Rigby WF, Zbehlik A (2014). Pancytopenia and cough in a man with amyopathic dermatomyositis. Arthritis care & research. Link

Onega T, Weaver D, Geller B, Oster N, Tosteson AN, Carney PA, Nelson H, Allison KH, O'Malley FP, Schnitt SJ, Elmore JG (2014). Digitized Whole Slides for Breast Pathology Interpretation: Current Practices and Perceptions. Journal of digital imaging. Link

Pallone MJ, Poplack SP, Avutu HB, Paulsen KD, Barth RJ, Jr. (2014). Supine Breast MRI and 3D Optical Scanning: A Novel Approach to Improve Tumor Localization for Breast Conserving Surgery. Annals of surgical oncology. Link

Park SL, Fesinmeyer MD, Timofeeva M, Caberto CP, Kocarnik JM, Han Y, Love SA, Young A, Dumitrescu L, Lin Y, Goodloe R, Wilkens LR, Hindorff L, Fowke JH, Carty C, Buyske S, Schumacher FR, Butler A, Dilks H, Deelman E, Cote ML, Chen W, Pande M, Christiani DC, Field JK, Bickebller H, Risch A, Heinrich J, Brennan P, Wang Y, Eisen T, Houlston RS, Thun M, Albanes D, Caporaso N, Peters U, North KE, Heiss G, Crawford DC, Bush WS, Haiman CA, Landi MT, Hung RJ, Kooperberg C, Amos CI, Le Marchand L, Cheng I (2014). Pleiotropic Associations of Risk Variants Identified for Other Cancers With Lung Cancer Risk: The PAGE and TRICL Consortia. Journal of the National Cancer Institute 106(4):dju061. PMCID: 3982896. Link

Prakash J, Dehghani H, Pogue BW, Yalavarthy PK (2014). Model-resolution-based basis pursuit deconvolution improves diffuse optical tomographic imaging. IEEE transactions on medical imaging 33(4):891-901. Link

Primack BA, McClure AC, Li Z, Sargent JD (2014). Receptivity to and Recall of Alcohol Brand Appearances in U.S. Popular Music and Alcohol-Related Behaviors. Alcoholism, clinical and experimental research. Link

Rath KS, Naidu SK, Lata P, Bid HK, Rivera BK, McCann GA, Tierney BJ, Elnaggar AC, Bravo V, Leone G, Houghton P, Hideg K, Kuppusamy P, Cohn DE, Selvendiran K (2014). HO-3867, a Safe STAT3 Inhibitor, Is Selectively Cytotoxic to Ovarian Cancer. Cancer research. Link

Reddy CA, Somepalli V, Golakoti T, Kanugula AK, Karnewar S, Rajendiran K, Vasagiri N, Prabhakar S, Kuppusamy P, Kotamraju S, Kutala VK (2014). Mitochondrial-targeted curcuminoids: a strategy to enhance bioavailability and anticancer efficacy of curcumin. PloS one 9(3):e89351. PMCID: 3951186. Link

Reeves DB, Weaver JB (2014). Magnetic nanoparticle sensing: decoupling the magnetization from the excitation field. Journal of physics D: Applied physics 47(4):045002. PMCID: 3939079. Link

Ribas A, Zhang W, Chang I, Shirai K, Ernstoff MS, Daud A, Cowey CL, Daniels G, Seja E, O'Laco E, Glaspy JA, Chmielowski B, Hill T, Joe AK, Grippo JF (2014). The effects of a high-fat meal on single-dose vemurafenib pharmacokinetics. Journal of clinical pharmacology 54(4):368-374. Link

Robertson DJ, Dominitz JA (2014). Stool DNA and colorectal-cancer screening. The New England journal of medicine 370(14):1350-1351. Link
Ruder EH, Hartman TJ, Reindollar RH, Goldman MB (2014). Female dietary antioxidant intake and time to pregnancy among couples treated for unexplained infertility. Fertility and sterility 101(3):759-766. PMCID: 3943921. Link

Salvat R, Moise L, Bailey-Kellogg C, Griswold KE (2014). A High Throughput MHC II Binding Assay for Quantitative Analysis of Peptide Epitopes. Journal of visualized experiments : JoVE (85). Link

Sentman CL, Meehan KR (2014). NKG2D CARs as Cell Therapy for Cancer. Cancer journal 20(2):156159. Link

Smith AA, Huang YT, Eliot M, Houseman EA, Marsit CJ, Wiencke JK, Kelsey KT (2014). A novel approach to the discovery of survival biomarkers in glioblastoma using a joint analysis of DNA methylation and gene expression. Epigenetics: official journal of the DNA Methylation Society 9(6).Link

Soneji S, Ambrose BK, Lee W, Sargent J, Tanski S (2014). Direct-To-Consumer Tobacco Marketing and Its Association With Tobacco Use Among Adolescents and Young Adults. The Journal of adolescent health: official publication of the Society for Adolescent Medicine. Link

Stadler WM, Vaughn DJ, Sonpavde G, Vogelzang NJ, Tagawa ST, Petrylak DP, Rosen P, Lin CC, Mahoney J, Modi S, Lee P, Ernstoff MS, Su WC, Spira A, Pilz K, Vinisko R, Schloss C, Fritsch H, Zhao C, Carducci MA (2014). An open-label, single-arm, phase 2 trial of the polo-like kinase inhibitor volasertib (BI 6727) in patients with locally advanced or metastatic urothelial cancer. Cancer 120(7):976-82. Link

Thrasher JF, Sargent JD, Vargas R, Braun S, Barrientos-Gutierrez T, Sevigny EL, Billings DL, Arillo-Santillan E, Navarro A, Hardin J (2014). Are movies with tobacco, alcohol, drugs, sex, and violence rated for youth? A comparison of rating systems in Argentina, Brazil, Mexico, and the United States. The International journal on drug policy 25(2):267-175. Link

Trentham-Dietz A, Sprague BL, Hampton JM, Miglioretti DL, Nelson HD, Titus LJ, Egan KM, Remington PL, Newcomb PA (2014). Modification of breast cancer risk according to age and menopausal status: a combined analysis of five population-based case-control studies. Breast cancer research and treatment 145(1):165-175. Link

Tsongalis GJ, Peterson JD, de Abreu FB, Tunkey CD, Gallagher TL, Strausbaugh LD, Wells WA, Amos CI (2014). Routine use of the Ion Torrent AmpliSeq Cancer Hotspot Panel for identification of clinically actionable somatic mutations. Clinical chemistry and laboratory medicine: CCLM / FESCC 52(5):707-714. Link

Valdes PA, Bekelis K, Harris BT, Wilson BC, Leblond F, Kim A, Simmons NE, Erkmen K, Paulsen KD, Roberts DW (2014). 5-Aminolevulinic acid-induced protoporphyrin IX fluorescence in meningioma: qualitative and quantitative measurements in vivo. Neurosurgery 10 Suppl 1:74-82; discussion -3. Link

Wiener RS, Gould MK, Slatore CG, Fincke BG, Schwartz LM, Woloshin S (2014). Resource Use and Guideline Concordance in Evaluation of Pulmonary Nodules for Cancer: Too Much and Too Little Care. JAMA internal medicine. Link

Williams BB, Flood AB, Salikhov I, Kobayashi K, Dong R, Rychert K, Du G, Schreiber W, Swartz HM (2014). In vivo EPR tooth dosimetry for triage after a radiation event involving large populations. Radiation and environmental biophysics. Link

Wira CR, Rodriguez-Garcia M, Shen Z, Patel M, Fahey JV (2014). The Role of Sex Hormones and the Tissue Environment in Immune Protection Against HIV in the Female Reproductive Tract. American journal of reproductive immunology. Link

Xiao F, Ma J, Cai G, Fang S, Lee JE, Wei Q, Amos CI (2014). Natural and orthogonal model for estimating gene-gene interactions applied to cutaneous melanoma. Human genetics 133(5):559-574. Link

Yachimski P, Wani S, Givens T, Howard E, Higginbotham T, Price A, Berman K, Hosford L, Katcher PM, Ozanne E, Perzan K, Hur C (2014). Preference of Endoscopic Ablation Over Medical Prevention of Esophageal Adenocarcinoma by Patients with Barrett's Esophagus. Clinical gastroenterology and hepatology: the official clinical practice journal of the American Gastroenterological Association. Link

Yardley DA, Kaufman PA, Brufsky A, Yood MU, Rugo H, Mayer M, Quah C, Yoo B, Tripathy D (2014). Treatment patterns and clinical outcomes for patients with de novo versus recurrent HER2-positive metastatic breast cancer. Breast cancer research and treatment. Link